When I first modded my Switch, I didn't realize I got some stuff installed on sysMMC, and some on emuMMC. It didn't help that some things worked in both. But soon it became clear that that was not the norm. One day some software that was the same on both became compartmentalized and also now I had to re-pair bluetooth controllers each time I switched firmwares. I made sure to only use emuMMC since then and I've tried to move the software out of sysMMC but the other thing I learned is...
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